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Welcome
to PopulusDB
This open resource for tree genomics is the result of a collaboration
between UPSC (Department of Plant Physiology, Umeå University and
Department of Forest Genetics and Plant Physiology, SLU Umeå and
Department of Biotechnology, KTH Stockholm, with financial contribution
from Knut and Alice Wallenberg Foundation, Kempestiftelserna, the
Foundation for Strategic Research, the Swedish Research Council and the
Swedish Research Council for the Environment, Agricultural Sciences and
Spatial Planning
The documentation of the database is currently being improved and
annotations and gene identities are soon to be updated, with the help
of the full genome sequence of Populus. Please bookmark this page and
return for new updates.
There are in PopulusDB links to our Populus DNA microarray database,
providing powerful search possibilities for our public microarray
datasets.
Links to the JGI Populus genome server has been added to PopulusDB
PopGenIE facilitates the exploration of
genes and gene function in Populus
By accessing PopulusDB, you agree to the
following user agreement:
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- PopulusDB is protected according to the
stipulations of Directive
96/9/EC of the European Parliament and of the Council of 11 March
1996 on the legal protection of databases.
- All users must include the reference below in publications describing
the use of PopulusDB.
Sterky F, Bhalerao RR, Unneberg
P, Segerman B, Nilsson P, Brunner AM, Campaa L, Jonsson Lindvall J,
Tandre K, Strauss SH, Sundberg B, Gustafsson P, Uhlen M, Bhalerao RP,
Nilsson O, Sandberg G, Karlsson J, Lundeberg J, Jansson S (2004)
A
Populus EST resource for plant functional genomics.
Proc Natl Acad Sci U S A. 2004 Sep 21;101(38):13951-6
Abstract
Full
text
-The data within PopulusDB are for research purposes only, not for
clinical or commercial use. It is a non-profit service to the
scientific community.
-The data within the PopulusDB are provided in good faith, but no
guarantee, express or implied, can be made as to their accuracy. WE
DO NOT ASSUME ANY LEGAL LIABILITY OR RESPONSIBILITY FOR ANY PURPOSE
FOR WHICH THE DATA ARE USED.
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Latest changes:
2007-11-27
Links between PU numbers and GO terms in Genespring file
fixed
2007-09-21 Genespring file column MODEL_TRANSCR_NUM replaced
by MODEL_PROTEIN_ID
2007-05-15 New Genespring file format with more information
regarding gene models
2005-07-03 New Annotations for PUs mapped directly to
genome. Genome position converted to model
2005-05-09 Weekly GO update-checking for the PU records and
the genespring file
2005-04-21 PU sequence and annotation exports added
2005-04-21 PU search functions updated
2005-04-12 PU record added
2005-04-12 New PU refset fasta avaliable
2005-03-22 New Genespring file with improved annotation
2004-10-08 Closest poplar genemodel added
2004-10-08 Records for new resequence EST reads from the 25K
array added
2004-09-21 Links from EST records to JGI genome server was
added
2004-08-31 Password protection removed
2004-07-06 Clones with PU numbers now contain link to the
UPSC microarray database.
2004-06-15 Server hardware upgrade performed
2004-02-29 Gene onthology updated
2004-02-27 New menu-skin
2004-02-27 Library distribution is now based on clones
rather than sequences.
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